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Re: FF with OpenMPI: Segmentation fault (core dumped)

Alex Granovsky
gran@classic.chem.msu.su


Hi,

different 1.x versions of OpenMPI are not binary compatible
at the level of shared libraries/ABI. What is the OpenMPI version
you are using? Firefly version 7.1.G binaries are compatible
with OpenMPI 1.2.x, Firefly version 8.0.0 RC is compatible with OpenMPI 1.4.x. These are the versions of OpenMPI you need to
compile and use.

Regards,
Alex Granovsky


On Fri Aug 10 '12 6:19pm, Eldar Mamin wrote
-------------------------------------------
>Dear all,

>i have installed OpenMPI with 32-bit shared libs on 64-bit OS Ubuntu,
>but running simple job i encountered such error

>eldar@ubuntu60:~/FF_ompi$ ./firefly -i BENCH01.INP -o B.out
>./firefly: Symbol `ompi_mpi_char' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_short' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_null' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_longdbl_int' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_packed' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_errors_are_fatal' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_int' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_min' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_double_int' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_unsigned_short' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_comm_null' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_errors_return' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_ub' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_bor' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_2int' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_long_double' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_prod' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_long_long_int' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_minloc' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_max' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_band' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_float_int' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_lor' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_short_int' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_unsigned_char' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_land' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_unsigned' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_lb' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_datatype_null' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_comm_self' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_double' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_bxor' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_long_int' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_comm_world' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_unsigned_long' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_sum' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_maxloc' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_float' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_byte' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_long' has different size in shared object, consider re-linking
>./firefly: Symbol `ompi_mpi_op_lxor' has different size in shared object, consider re-linking
>Segmentation fault (core dumped)

>paths to bin and to libraries were exported.
>what it may be?


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