Firefly and PC GAMESS-related discussion club


 
Learn how to ask questions correctly  
 
 
We are NATO-free zone
 



Re^2: FF with OpenMPI: Segmentation fault (core dumped)

Eldar Mamin
eldarmamin@gmail.com


Thanks for your answer,

i really tried to run ff7 with OpenMPI 1.4
I installed Firefly version 8.0.0 RC
and now it works in parallel.

On Fri Aug 10 '12 7:48pm, Alex Granovsky wrote
----------------------------------------------
>Hi,

>different 1.x versions of OpenMPI are not binary compatible
>at the level of shared libraries/ABI. What is the OpenMPI version
>you are using? Firefly version 7.1.G binaries are compatible
>with OpenMPI 1.2.x, Firefly version 8.0.0 RC is compatible with OpenMPI 1.4.x. These are the versions of OpenMPI you need to
>compile and use.

>Regards,
>Alex Granovsky
>
>
>On Fri Aug 10 '12 6:19pm, Eldar Mamin wrote
>-------------------------------------------
>>Dear all,

>>i have installed OpenMPI with 32-bit shared libs on 64-bit OS Ubuntu,
>>but running simple job i encountered such error

>>eldar@ubuntu60:~/FF_ompi$ ./firefly -i BENCH01.INP -o B.out
>>./firefly: Symbol `ompi_mpi_char' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_short' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_null' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_longdbl_int' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_packed' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_errors_are_fatal' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_int' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_min' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_double_int' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_unsigned_short' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_comm_null' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_errors_return' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_ub' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_bor' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_2int' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_long_double' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_prod' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_long_long_int' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_minloc' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_max' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_band' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_float_int' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_lor' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_short_int' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_unsigned_char' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_land' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_unsigned' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_lb' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_datatype_null' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_comm_self' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_double' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_bxor' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_long_int' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_comm_world' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_unsigned_long' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_sum' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_maxloc' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_float' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_byte' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_long' has different size in shared object, consider re-linking
>>./firefly: Symbol `ompi_mpi_op_lxor' has different size in shared object, consider re-linking
>>Segmentation fault (core dumped)

>>paths to bin and to libraries were exported.
>>what it may be?


[ Previous ] [ Next ] [ Index ]           Tue Aug 14 '12 2:09pm
[ Reply ] [ Edit ] [ Delete ]           This message read 1196 times