Miro Moman
edelmiro.moman@gmail.com
If I run:
mpiexec -np 16 /home/mirix/Downloads/firefly/firefly_71g_linux_mpich2_p4/firefly -i complex.inp -o output.out /disk/scratch/pcgamess /tmp/pcgamess
The program does not run and I obtain:
FATAL ERROR INITIALIZING FIREFLY! CHECK YOUR COMMAND LINE OPTIONS!
ON MASTER NODE, ERROR CODE IS : 0x00000004
Unable to create output file
If I remove the "-o output.out" option, the program runs, but the end of the output file reads:
2000000 WORDS OF MEMORY AVAILABLE
Warning: running without fastdiag runtime extension!
Warning: HTT is enabled, bitmask of physically unique cores is 0x0000FF00
SMT aware parts of program will use 2 threads.
Creating thread pool to serve up to 128 threads.
Activating Call64 option.
Using 64-bit DGEMM by default.
**** ERROR, NO $DATA GROUP WAS FOUND
CPU TIME: STEP = 0.90 , TOTAL = 1.3 SECONDS ( 0.0 MIN)
WALL CLOCK TIME: STEP = 0.89 , TOTAL = 0.9 SECONDS ( 0.0 MIN)
CPU UTILIZATION: STEP = 100.74%, TOTAL = 145.51%
0 WORDS OF DYNAMIC MEMORY USED
EXECUTION OF FIREFLY TERMINATED ABNORMALLY AT 19:34:26 LT 20-JUN-2010
On Sun Jun 20 '10 8:04pm, Miro Moman wrote
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>Hello,
>I am trying to run the MPICH2-Linux version of Firefly (firefly_71g_linux_mpich2_p4) in a local machine with two quad-core Nehalem processors. I have started the mpd daemon as per the MPICH website instructions.
>This is the command line I am using:
>/home/mirix/Downloads/firefly/firefly_71g_linux_mpich2_p4/firefly -i complex.inp -o output.out /disk/scratch/pcgamess /tmp/pcgamess -p4pg /home/mirix/Downloads/firefly/combo/procgrp
>The input file is the example from Combo (optimization of the final complex).
>As for the procgrp file I have tried:
>local 7 and aeolus 7 /home/mirix/Downloads/firefly/firefly_71g_linux_mpich2_p4/firefly
>Firefly correctly detects 8 cores and 16 threads but it only uses one processor.
>Best regards,
>Miro